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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
39
ATAC-seq
36
single cell RNA-seq
21
snATAC-seq
13
total RNA-seq
9
RRBS
4
Hi-C
2
small RNA-seq
Assay category
60
DNA accessibility
51
Transcription
50
DNA methylation
4
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
79
May, 2021
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
31
July, 2019
27
September, 2018
26
August, 2017
13
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
0
December, 2017
Available data
134
zippedFastqFolder
22
bigWig
18
bam
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
165
Homo sapiens
Biosample type
165
primary cell
110
tissue
9
in vitro differentiated cells
1
stem cell
Organ
93
epithelium
80
pancreas
8
connective tissue
7
brain
7
kidney
5
heart
5
vasculature
4
blood vessel
3
musculature of body
2
adipose tissue
2
artery
2
liver
1
eye
1
pericardium
Project
134
HPAP
31
AMP
Genome assembly (visualization)
31
hg19
18
GRCh38
Lab
134
Klaus Kaestner, Upenn
31
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
165 results
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WGBS
ATAC-seq
single cell RNA-seq
snATAC-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cerebellar granule cell
2
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