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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
27
snATAC-seq
17
pCHi-C
12
single cell RNA-seq
7
ChIP-seq
6
WGBS
1
DNAme array
Assay category
68
Transcription
27
DNA accessibility
7
DNA binding
7
DNA methylation
Target of assay
4
histone
4
histone modification
3
control
2
broad histone mark
2
narrow histone mark
Date released
147
May, 2020
134
May, 2022
February, 2023
79
May, 2021
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
31
July, 2019
27
September, 2018
26
August, 2017
13
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
173
bigWig
152
bam
bed narrowPeak
84
tagAlign
59
tsv
45
fastq
3
bed bed3+
1
bed bed3
Organism
126
Homo sapiens
Biosample type
577
tissue
153
in vitro differentiated cells
126
primary cell
102
cell line
Organ
6
epithelium
6
pancreas
3
connective tissue
1
bone element
1
bone marrow
Project
67
T1D
45
HPAP
14
AMP
Genome assembly (visualization)
59
hg19
53
GRCh38
Lab
72
Kyle Gaulton, UCSD
45
Klaus Kaestner, Upenn
9
AMP-T2D consortium
Audit category:
27
audit script error
1
inconsistent ontology term
files.file_type!
bed narrowPeak
month_released!
February, 2023
BIOSAMPLE
ASSAY
126 results
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total RNA-seq
snATAC-seq
pCHi-C
single cell RNA-seq
ChIP-seq
WGBS
DNAme array
primary cell
monocyte
52
1
1
1
Langerhans cell
27
12
CD8-positive, alpha-beta T cell
2
1
3
pancreatic alpha cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
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