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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
27
total RNA-seq
13
single cell RNA-seq
6
WGBS
1
pCHi-C
Assay category
40
Transcription
27
DNA accessibility
6
DNA methylation
Date released
147
May, 2020
134
May, 2022
88
February, 2023
79
May, 2021
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
31
July, 2019
27
September, 2018
26
August, 2017
13
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
118
fastq
75
bam
74
bigWig
bed narrowPeak
33
tsv
14
bigBed narrowPeak
1
bed bed3
1
bed bed3+
1
csv
Organism
74
Homo sapiens
Biosample type
537
tissue
82
cell line
74
primary cell
26
in vitro differentiated cells
Organ
32
epithelium
32
pancreas
2
connective tissue
Project
45
HPAP
29
AMP
Genome assembly (visualization)
28
hg19
27
GRCh38
Lab
45
Klaus Kaestner, Upenn
29
AMP-T2D consortium
Audit category:
27
audit script error
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
74 results
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snATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
primary cell
Langerhans cell
27
12
pancreatic alpha cell
10
6
pancreatic beta cell
10
pancreatic ductal cell
4
osteoblast
1
1
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