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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
single cell RNA-seq
16
total RNA-seq
7
ChIP-seq
3
ATAC-seq
1
Hi-C
Assay category
56
Transcription
7
DNA binding
3
DNA accessibility
1
3D chromatin structure
Target of assay
5
histone
5
histone modification
4
broad histone mark
2
control
1
narrow histone mark
Date released
147
May, 2020
134
May, 2022
88
February, 2023
79
May, 2021
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
27
September, 2018
26
August, 2017
24
July, 2019
8
January, 2021
8
October, 2019
7
August, 2020
7
June, 2019
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
41
fastq
22
bam
19
zippedFastqFolder
18
bigWig
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
hic
1
tar
Organism
67
Homo sapiens
Biosample type
89
tissue
67
primary cell
8
cell line
6
in vitro differentiated cells
Organ
32
epithelium
19
pancreas
8
blood vessel
8
vasculature
8
vein
kidney
Project
59
HPAP
8
AMP
Genome assembly (visualization)
3
GRCh38
3
hg19
Lab
59
Klaus Kaestner, Upenn
8
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed narrowPeak
organ_slims!
kidney
BIOSAMPLE
ASSAY
67 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
endothelial cell of umbilical vein
7
1
pancreatic beta cell
1
1
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