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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
4
DNase-seq
2
ATAC-seq
2
total RNA-seq
1
FAIRE-seq
1
Hi-C
Assay category
33
DNA binding
7
DNA accessibility
2
Transcription
1
3D chromatin structure
Target of assay
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
40
bam
32
bigWig
27
bed narrowPeak
19
bigBed narrowPeak
10
bed broadPeak
10
bigBed broadPeak
9
fastq
2
bed bed3+
2
tsv
1
hic
1
tar
Organism
43
Homo sapiens
Biosample type
345
cell line
324
tissue
43
primary cell
8
in vitro differentiated cells
Organ
39
epithelium
27
vasculature
24
blood vessel
21
vein
11
kidney
9
brain
1
liver
Project
43
AMP
Genome assembly (visualization)
35
hg19
28
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
bedpe
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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