Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
217
ChIP-seq
197
ATAC-seq
181
single cell RNA-seq
56
snATAC-seq
47
WGBS
24
DNase-seq
17
pCHi-C
8
RRBS
3
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
430
Transcription
278
DNA accessibility
217
DNA binding
56
DNA methylation
3
3D chromatin structure
Target of assay
196
histone
196
histone modification
106
broad histone mark
90
narrow histone mark
16
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
August, 2017
59
September, 2020
50
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
24
July, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
August, 2018
3
June, 2018
2
October, 2018
1
March, 2023
1
November, 2018
Available data
544
bigWig
531
bam
339
fastq
264
tsv
251
bed narrowPeak
153
zippedFastqFolder
88
tagAlign
79
bigBed narrowPeak
29
bed bed3+
24
bed broadPeak
24
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
1
tar
Organism
1001
Homo sapiens
Biosample type
2218
tissue
1001
primary cell
660
cell line
319
in vitro differentiated cells
10
stem cell
Organ
370
epithelium
299
pancreas
39
connective tissue
36
kidney
36
vasculature
30
blood vessel
brain
21
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
475
AMP
321
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
553
hg19
477
GRCh38
Lab
440
AMP-T2D consortium
321
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
28
audit script error
Audit category:
32
missing controlled_by
files.file_type!
bedpe bed3+
month_released!
August, 2017
August, 2018
organ_slims!
brain
BIOSAMPLE
ASSAY
1001 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
52
34
10
31
pancreatic beta cell
21
22
12
16
CD8-positive, alpha-beta T cell
4
33
2
1
+ See 87 more…
See all biosamples
Download