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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
187
ATAC-seq
187
single cell RNA-seq
95
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
381
Transcription
275
DNA accessibility
95
DNA binding
57
DNA methylation
6
3D chromatin structure
Target of assay
119
histone
119
histone modification
narrow histone mark
56
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
58
September, 2018
48
February, 2021
48
July, 2018
44
June, 2019
43
April, 2018
37
August, 2017
31
July, 2019
25
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
2
August, 2021
2
October, 2018
1
March, 2023
1
November, 2018
Available data
397
bam
380
bigWig
369
fastq
218
tsv
153
zippedFastqFolder
114
bed narrowPeak
83
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
9
tagAlign
6
hic
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
815
Homo sapiens
Biosample type
2364
tissue
815
primary cell
610
cell line
206
in vitro differentiated cells
9
stem cell
Organ
367
epithelium
312
pancreas
34
connective tissue
31
kidney
28
vasculature
23
blood vessel
18
brain
15
vein
12
liver
11
heart
10
musculature of body
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
440
AMP
321
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
378
hg19
325
GRCh38
Lab
440
AMP-T2D consortium
321
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
44
inconsistent ontology term
28
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
files.file_type!
bedpe bed3+
month_released!
May, 2021
November, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
815 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
RRBS
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
52
35
12
9
31
Langerhans cell
85
48
pancreatic beta cell
21
23
12
9
16
exocrine cell
39
pancreatic acinar cell
4
9
12
4
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