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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
187
single cell RNA-seq
183
ChIP-seq
178
ATAC-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
236
DNA accessibility
183
DNA binding
48
DNA methylation
4
3D chromatin structure
Target of assay
164
histone
164
histone modification
91
broad histone mark
73
narrow histone mark
22
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
August, 2017
22
July, 2019
20
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
2
October, 2018
1
May, 2019
1
November, 2018
Available data
567
bigWig
551
bam
351
fastq
270
tsv
262
bed narrowPeak
153
zippedFastqFolder
bigBed narrowPeak
88
tagAlign
37
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
9
bed bedMethyl
bigBed bedMethyl
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
924
Homo sapiens
Biosample type
1923
tissue
924
primary cell
306
in vitro differentiated cells
304
cell line
10
stem cell
Organ
308
epithelium
283
pancreas
23
connective tissue
17
kidney
13
vasculature
12
blood vessel
11
liver
9
brain
8
blood
8
bodily fluid
7
vein
6
heart
4
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
399
AMP
321
HPAP
204
T1D
Genome assembly (visualization)
484
hg19
404
GRCh38
Lab
364
AMP-T2D consortium
321
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
29
inconsistent ontology term
27
audit script error
Audit category:
32
missing controlled_by
files.file_type!
bigBed bedMethyl
bigBed narrowPeak
hic
month_released!
August, 2017
BIOSAMPLE
ASSAY
924 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
DNase-seq
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
52
12
29
31
pancreatic beta cell
21
12
16
16
CD8-positive, alpha-beta T cell
4
33
2
1
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