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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
55
total RNA-seq
16
pCHi-C
13
ATAC-seq
1
DNAme array
Assay category
55
DNA binding
55
Transcription
13
DNA accessibility
1
DNA methylation
Target of assay
118
histone
118
histone modification
broad histone mark
52
narrow histone mark
3
control
Date released
147
May, 2020
140
May, 2021
134
May, 2022
88
February, 2023
59
September, 2020
56
September, 2018
48
February, 2021
48
July, 2018
47
June, 2019
43
April, 2018
42
August, 2017
22
October, 2019
18
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
August, 2021
3
June, 2018
3
May, 2019
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
107
bigWig
105
bam
63
bed narrowPeak
52
tsv
40
tagAlign
2
bed bed3+
Organism
140
Homo sapiens
Biosample type
140
primary cell
122
in vitro differentiated cells
40
tissue
21
cell line
Organ
1
bone element
1
bone marrow
1
connective tissue
Project
107
T1D
33
AMP
Genome assembly (visualization)
120
hg19
105
GRCh38
Lab
122
Kyle Gaulton, UCSD
18
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigBed bedMethyl
hdf5
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
140 results
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ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
DNAme array
primary cell
monocyte
41
52
1
13
1
CD8-positive, alpha-beta T cell
13
2
1
CD4-positive, alpha-beta T cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
1
1
B cell
1
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