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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
270
ChIP-seq
246
total RNA-seq
199
ATAC-seq
172
single cell RNA-seq
41
WGBS
29
snATAC-seq
26
DNase-seq
16
pCHi-C
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
420
Transcription
270
DNA binding
255
DNA accessibility
42
DNA methylation
7
3D chromatin structure
Target of assay
234
histone
234
histone modification
122
broad histone mark
112
narrow histone mark
29
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
50
June, 2019
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
16
July, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
591
bigWig
589
bam
355
fastq
283
bed narrowPeak
260
tsv
153
zippedFastqFolder
100
tagAlign
98
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
28
bed bed3+
9
bed bedMethyl
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
2
csv
1
hdf5
1
tar
Organism
1010
Homo sapiens
Biosample type
1943
tissue
1010
primary cell
565
cell line
368
in vitro differentiated cells
10
stem cell
Organ
394
epithelium
340
pancreas
36
vasculature
35
connective tissue
33
kidney
31
blood vessel
22
vein
brain
13
liver
13
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
526
AMP
279
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
595
hg19
520
GRCh38
Lab
491
AMP-T2D consortium
279
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
52
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bigBed bedMethyl
month_released!
February, 2021
organ_slims!
brain
BIOSAMPLE
ASSAY
1010 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
25
1
Langerhans cell
73
21
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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