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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
247
total RNA-seq
200
ATAC-seq
139
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
388
Transcription
288
DNA accessibility
269
DNA binding
48
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
56
August, 2017
51
June, 2019
48
February, 2021
July, 2018
43
April, 2018
34
October, 2019
22
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
555
bigWig
551
bam
356
fastq
285
bed narrowPeak
222
tsv
153
zippedFastqFolder
100
tagAlign
99
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1020
Homo sapiens
Biosample type
2604
tissue
1020
primary cell
596
cell line
383
in vitro differentiated cells
10
stem cell
Organ
362
epithelium
309
pancreas
35
connective tissue
34
vasculature
31
kidney
30
blood vessel
22
vein
17
brain
13
liver
13
musculature of body
11
heart
8
blood
8
bodily fluid
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
491
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
560
hg19
479
GRCh38
Lab
456
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
43
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bigBed bedMethyl
month_released!
July, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
1020 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
5
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
3
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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