Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
166
total RNA-seq
157
ChIP-seq
129
ATAC-seq
113
single cell RNA-seq
56
snATAC-seq
17
pCHi-C
10
RRBS
7
Hi-C
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
281
Transcription
189
DNA accessibility
157
DNA binding
11
DNA methylation
7
3D chromatin structure
Target of assay
144
histone
144
histone modification
79
broad histone mark
65
narrow histone mark
15
control
1
RNA binding protein
1
transcription factor
Date released
206
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
31
July, 2019
June, 2019
30
October, 2019
11
July, 2018
10
April, 2018
8
January, 2021
5
December, 2019
5
May, 2019
5
November, 2020
4
August, 2017
4
August, 2021
3
November, 2017
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
374
bigWig
360
bam
180
bed narrowPeak
162
tsv
151
fastq
100
tagAlign
73
zippedFastqFolder
40
bigBed narrowPeak
25
bed broadPeak
bigBed broadPeak
13
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
662
Homo sapiens
Biosample type
2100
tissue
662
primary cell
512
cell line
390
in vitro differentiated cells
10
stem cell
Organ
378
epithelium
pancreas
25
vasculature
23
blood vessel
23
kidney
21
connective tissue
18
vein
12
liver
10
brain
8
blood
8
bodily fluid
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
285
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
378
hg19
276
GRCh38
Lab
250
AMP-T2D consortium
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
28
audit script error
24
inconsistent ontology term
Audit category:
1
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
files.file_type!
bigBed broadPeak
month_released!
June, 2019
organ_slims!
pancreas
pituitary gland
BIOSAMPLE
ASSAY
662 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
4
33
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
22
1
+ See 78 more…
See all biosamples
Download