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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
154
single cell RNA-seq
139
ATAC-seq
133
ChIP-seq
35
snATAC-seq
17
pCHi-C
10
Hi-C
10
RRBS
6
WGBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
403
Transcription
176
DNA accessibility
133
DNA binding
17
DNA methylation
10
3D chromatin structure
Target of assay
103
histone
103
histone modification
56
broad histone mark
47
narrow histone mark
33
control
Date released
147
May, 2020
May, 2022
122
May, 2021
88
February, 2023
59
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
39
August, 2017
31
July, 2019
21
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
5
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
bigBed narrowPeak
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
19
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
756
Homo sapiens
Biosample type
1953
tissue
756
primary cell
337
in vitro differentiated cells
296
cell line
10
stem cell
Organ
261
epithelium
244
pancreas
24
connective tissue
20
kidney
16
vasculature
14
blood vessel
10
brain
9
vein
8
blood
8
bodily fluid
8
liver
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
445
AMP
190
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
438
hg19
344
GRCh38
Lab
410
AMP-T2D consortium
190
Klaus Kaestner, Upenn
155
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
31
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
bigBed narrowPeak
tagAlign
month_released!
April, 2019
May, 2022
BIOSAMPLE
ASSAY
756 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
DNase-seq
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
12
7
13
1
6
Langerhans cell
52
27
monocyte
54
15
1
1
1
pancreatic beta cell
21
12
3
13
1
CD8-positive, alpha-beta T cell
4
2
33
1
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