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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
single cell RNA-seq
178
ATAC-seq
149
total RNA-seq
101
ChIP-seq
48
snATAC-seq
47
WGBS
10
Hi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
338
Transcription
228
DNA accessibility
101
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
73
histone
73
histone modification
37
narrow histone mark
36
broad histone mark
31
control
Date released
134
May, 2022
102
May, 2020
88
February, 2023
59
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
40
August, 2017
31
July, 2019
21
October, 2019
20
May, 2021
8
June, 2019
7
August, 2020
5
December, 2019
5
November, 2020
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
425
bam
409
fastq
395
bigWig
178
bed narrowPeak
174
tsv
153
zippedFastqFolder
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
32
bed bed3+
12
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
736
Homo sapiens
Biosample type
1935
tissue
736
primary cell
288
in vitro differentiated cells
258
cell line
10
stem cell
Organ
341
epithelium
324
pancreas
23
connective tissue
20
kidney
16
vasculature
14
blood vessel
10
brain
9
vein
8
liver
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
411
AMP
324
HPAP
1
ITG
Genome assembly (visualization)
308
hg19
248
GRCh38
Lab
411
AMP-T2D consortium
324
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
26
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
bigBed narrowPeak
lab.title!
Kyle Gaulton, UCSD
month_released!
August, 2021
BIOSAMPLE
ASSAY
736 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
WGBS
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic alpha cell
12
29
52
13
31
1
Langerhans cell
85
48
pancreatic beta cell
12
16
21
13
16
1
exocrine cell
39
pancreatic acinar cell
12
4
4
8
1
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