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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
105
ChIP-seq
102
single cell RNA-seq
57
total RNA-seq
10
RRBS
6
Hi-C
2
DNase-seq
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
161
Transcription
131
DNA accessibility
105
DNA binding
11
DNA methylation
6
3D chromatin structure
Target of assay
76
histone
76
histone modification
39
narrow histone mark
37
broad histone mark
32
control
Date released
102
May, 2020
59
September, 2018
48
July, 2018
43
April, 2018
40
August, 2017
31
July, 2019
21
October, 2019
20
May, 2021
12
February, 2023
8
June, 2019
5
December, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
3
November, 2017
2
October, 2018
1
March, 2020
1
May, 2019
1
November, 2018
Available data
429
bam
388
bigWig
240
fastq
181
bed narrowPeak
168
tsv
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
415
Homo sapiens
Biosample type
1864
tissue
415
primary cell
323
in vitro differentiated cells
260
cell line
8
stem cell
Organ
193
epithelium
172
pancreas
23
connective tissue
20
kidney
16
vasculature
14
blood vessel
12
liver
10
brain
9
vein
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
415
AMP
Genome assembly (visualization)
308
hg19
240
GRCh38
Lab
415
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
26
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
bigBed narrowPeak
target.investigated_as!
other context
BIOSAMPLE
ASSAY
415 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic alpha cell
13
12
10
pancreatic beta cell
13
12
10
pancreatic ductal cell
13
10
4
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
pancreatic acinar cell
8
12
4
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