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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
total RNA-seq
152
ChIP-seq
128
ATAC-seq
84
single cell RNA-seq
35
snATAC-seq
17
pCHi-C
4
RRBS
3
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
240
Transcription
163
DNA accessibility
152
DNA binding
5
DNA methylation
3
3D chromatin structure
Target of assay
141
histone
141
histone modification
77
broad histone mark
64
narrow histone mark
14
control
Date released
206
May, 2021
147
May, 2020
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
18
July, 2019
15
July, 2018
14
August, 2017
12
September, 2018
10
April, 2018
8
January, 2021
6
June, 2019
5
November, 2020
2
June, 2018
1
March, 2023
1
November, 2017
1
November, 2018
1
October, 2019
Available data
382
bigWig
367
bam
189
bed narrowPeak
171
fastq
154
tsv
96
tagAlign
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
19
zippedFastqFolder
16
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
580
Homo sapiens
Biosample type
2119
tissue
580
primary cell
367
in vitro differentiated cells
229
cell line
10
stem cell
Organ
epithelium
244
pancreas
24
connective tissue
20
kidney
16
vasculature
14
blood vessel
12
liver
10
brain
9
vein
8
blood
8
bodily fluid
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
257
AMP
204
T1D
118
HPAP
1
ITG
Genome assembly (visualization)
354
hg19
266
GRCh38
Lab
239
Kyle Gaulton, UCSD
222
AMP-T2D consortium
118
Klaus Kaestner, Upenn
1
ITG
Audit category:
27
audit script error
26
inconsistent ontology term
Audit category:
23
missing controlled_by
files.file_type!
bigBed narrowPeak
month_released!
April, 2019
May, 2022
organ_slims!
epithelium
BIOSAMPLE
ASSAY
580 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
1
Langerhans cell
52
27
CD8-positive, alpha-beta T cell
4
33
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
22
1
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