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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
total RNA-seq
184
single cell RNA-seq
178
ATAC-seq
131
ChIP-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
9
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
429
Transcription
236
DNA accessibility
131
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
190
histone
190
histone modification
101
broad histone mark
narrow histone mark
33
control
Date released
154
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
48
February, 2021
48
July, 2018
44
September, 2018
43
April, 2018
26
July, 2019
24
August, 2017
17
October, 2019
8
January, 2021
7
August, 2020
6
June, 2019
5
December, 2019
5
November, 2020
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
August, 2021
2
October, 2018
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
493
bam
490
bigWig
366
fastq
263
tsv
187
bed narrowPeak
153
zippedFastqFolder
bigBed narrowPeak
53
tagAlign
38
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
880
Homo sapiens
Biosample type
1793
tissue
880
primary cell
325
in vitro differentiated cells
232
cell line
9
stem cell
Organ
317
epithelium
290
pancreas
24
connective tissue
17
kidney
15
vasculature
13
blood vessel
10
brain
10
liver
8
blood
8
bodily fluid
8
vein
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
391
AMP
324
HPAP
164
T1D
1
ITG
Genome assembly (visualization)
432
hg19
348
GRCh38
Lab
366
AMP-T2D consortium
324
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
29
inconsistent ontology term
Audit category:
21
missing controlled_by
files.file_type!
bigBed narrowPeak
month_released!
August, 2018
organ_slims!
heart
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
880 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
10
29
9
31
1
monocyte
54
15
44
1
1
pancreatic beta cell
21
12
16
9
16
1
exocrine cell
39
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