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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
156
total RNA-seq
149
ChIP-seq
127
ATAC-seq
73
single cell RNA-seq
56
snATAC-seq
15
pCHi-C
9
RRBS
6
Hi-C
2
DNase-seq
1
DNAme array
1
small RNA-seq
Assay category
230
Transcription
185
DNA accessibility
149
DNA binding
10
DNA methylation
6
3D chromatin structure
Target of assay
132
histone
132
histone modification
74
broad histone mark
58
narrow histone mark
20
control
Date released
205
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
September, 2020
39
February, 2021
23
July, 2019
21
October, 2019
11
July, 2018
10
April, 2018
8
January, 2021
5
December, 2019
5
June, 2019
4
August, 2021
3
November, 2017
2
August, 2017
2
June, 2018
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
September, 2018
Available data
393
bigWig
383
bam
210
bed narrowPeak
151
tsv
129
fastq
100
tagAlign
bigBed narrowPeak
54
zippedFastqFolder
43
bed broadPeak
43
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
3
hdf5
3
hic
2
csv
1
bedpe bed3+
1
tar
Organism
595
Homo sapiens
Biosample type
1236
tissue
595
primary cell
280
in vitro differentiated cells
222
cell line
9
stem cell
Organ
326
epithelium
pancreas
connective tissue
20
kidney
16
vasculature
14
blood vessel
12
liver
10
brain
9
vein
8
blood
8
bodily fluid
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
259
AMP
203
T1D
132
HPAP
1
ITG
Genome assembly (visualization)
347
hg19
248
GRCh38
Lab
238
Kyle Gaulton, UCSD
224
AMP-T2D consortium
132
Klaus Kaestner, Upenn
1
ITG
Audit category:
28
audit script error
23
inconsistent ontology term
files.file_type!
bigBed narrowPeak
month_released!
September, 2020
organ_slims!
connective tissue
pancreas
BIOSAMPLE
ASSAY
595 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
small RNA-seq
primary cell
monocyte
54
85
15
1
1
Langerhans cell
45
48
CD8-positive, alpha-beta T cell
4
33
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
22
1
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