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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
12
single cell RNA-seq
8
ChIP-seq
6
WGBS
1
ATAC-seq
1
pCHi-C
1
total RNA-seq
Assay category
28
DNA accessibility
13
Transcription
8
DNA binding
6
DNA methylation
Target of assay
8
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
40
August, 2017
31
July, 2019
21
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
58
bam
49
bigWig
48
bed narrowPeak
bigBed narrowPeak
45
fastq
25
bed bed3+
24
bed broadPeak
24
bigBed broadPeak
7
tsv
1
bed bed3
Organism
56
Homo sapiens
Biosample type
545
tissue
96
cell line
56
primary cell
26
in vitro differentiated cells
Organ
8
epithelium
6
connective tissue
6
pancreas
2
heart
2
musculature of body
1
eye
1
kidney
Project
45
HPAP
11
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
45
Klaus Kaestner, Upenn
11
AMP-T2D consortium
Audit category:
27
audit script error
4
inconsistent ontology term
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
56 results
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snATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
ATAC-seq
pCHi-C
total RNA-seq
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
cardiac fibroblast
2
cardiac muscle cell
1
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