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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
total RNA-seq
4
ChIP-seq
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
5
Transcription
4
DNA binding
1
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
1
control
Date released
5
December, 2019
4
August, 2021
2
July, 2019
1
October, 2019
Available data
12
bam
11
bigWig
6
bed bed3+
6
bed narrowPeak
5
tsv
4
tagAlign
2
bed broadPeak
2
bigBed broadPeak
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
12
Homo sapiens
Biosample type
312
tissue
108
cell line
12
primary cell
1
in vitro differentiated cells
Organ
345
epithelium
324
pancreas
24
connective tissue
20
kidney
16
vasculature
14
blood vessel
12
liver
10
brain
9
vein
8
blood
8
bodily fluid
7
heart
5
musculature of body
2
adipose tissue
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
12
AMP
Genome assembly (visualization)
11
hg19
9
GRCh38
Lab
12
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigBed narrowPeak
organ_slims!
artery
lymph node
BIOSAMPLE
ASSAY
12 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
RRBS
primary cell
hepatocyte
5
4
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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