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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 247total RNA-seq
  • 222ChIP-seq
  • 187single cell RNA-seq
  • 178ATAC-seq
  • 56snATAC-seq
  • 47WGBS
  • 17pCHi-C
  • 10Hi-C
  • 10RRBS
  • 2DNase-seq
  • 2small RNA-seq
  • 1DNAme array
Assay category
  • 436Transcription
  • 236DNA accessibility
  • 222DNA binding
  • 58DNA methylation
  • 103D chromatin structure
Target of assay
  • 190histone
  • 190histone modification
  • 101broad histone mark
  • 89narrow histone mark
  • 35control
Date released
  • 206May, 2021
  • 147May, 2020
  • 134May, 2022
  • 88February, 2023
  • 59September, 2018
  • 59September, 2020
  • 48February, 2021
  • 48July, 2018
  • 43April, 2018
  • 40August, 2017
  • 31July, 2019
  • 21October, 2019
  • 8January, 2021
  • 8June, 2019
  • 7August, 2020
  • 5December, 2019
  • 5November, 2020
  • 4August, 2021
  • 3August, 2018
  • 3June, 2018
  • 3November, 2017
  • 3October, 2022
  • 2October, 2018
  • 1March, 2020
  • 1March, 2023
  • 1May, 2019
  • 1November, 2018
Available data
  • 613bigWig
  • 609bam
  • 409fastq
  • 295bed narrowPeak
  • 270tsv
  • 153zippedFastqFolder
  • bigBed narrowPeak
  • 100tagAlign
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 37bed bed3+
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 6hic
  • 4bedpe bed3+
  • 4hdf5
  • 3cool
  • 2csv
  • 1bed bed3
  • 1tar
Organism
  • 979Homo sapiens
Biosample type
  • 2216tissue
  • 979primary cell
  • 377in vitro differentiated cells
  • 307cell line
  • 10stem cell
Organ
  • 345epithelium
  • 324pancreas
  • 24connective tissue
  • 20kidney
  • 16vasculature
  • 14blood vessel
  • 12liver
  • 10brain
  • 9vein
  • 8blood
  • 8bodily fluid
  • 7heart
  • 5musculature of body
  • 2adipose tissue
  • 2artery
  • 2eye
  • 1bone element
  • 1bone marrow
  • 1pericardium
Project
  • 450AMP
  • 324HPAP
  • 204T1D
  • 1ITG
Genome assembly (visualization)
  • 526hg19
  • 431GRCh38
Lab
  • 415AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 239Kyle Gaulton, UCSD
  • 1ITG
Audit category:
  • 31audit script error
  • 31inconsistent ontology term
Audit category:
  • 44missing controlled_by
Audit category:
  • 4inconsistent control read length
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

979 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
monocyte54851511
pancreatic alpha cell52131229311
Langerhans cell8548
pancreatic beta cell21131216161
CD8-positive, alpha-beta T cell43321
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