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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
single cell RNA-seq
82
ATAC-seq
56
snATAC-seq
42
total RNA-seq
17
pCHi-C
10
ChIP-seq
4
RRBS
1
DNAme array
1
Hi-C
Assay category
138
DNA accessibility
127
Transcription
10
DNA binding
5
DNA methylation
1
3D chromatin structure
Target of assay
6
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
Date released
57
May, 2020
54
May, 2022
51
February, 2023
40
February, 2021
40
September, 2020
35
May, 2021
8
January, 2021
6
June, 2019
3
July, 2019
1
August, 2017
1
March, 2023
1
November, 2020
1
October, 2019
Available data
bigWig
367
bam
189
bed narrowPeak
171
fastq
154
tsv
96
tagAlign
73
zippedFastqFolder
48
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
16
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
csv
2
hdf5
1
bed bed3
1
hic
Organism
298
Homo sapiens
Biosample type
984
tissue
298
primary cell
131
in vitro differentiated cells
111
cell line
7
stem cell
Organ
epithelium
154
pancreas
8
blood
8
bodily fluid
8
kidney
8
vasculature
7
blood vessel
7
connective tissue
7
vein
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
Project
172
HPAP
101
AMP
24
T1D
1
ITG
Genome assembly (visualization)
20
hg19
16
GRCh38
Lab
172
Klaus Kaestner, Upenn
101
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
27
audit script error
12
inconsistent ontology term
files.file_type!
bigWig
csv
organ_slims!
epithelium
BIOSAMPLE
ASSAY
298 results
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single cell RNA-seq
ATAC-seq
snATAC-seq
total RNA-seq
pCHi-C
ChIP-seq
RRBS
DNAme array
Hi-C
primary cell
Langerhans cell
85
48
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
2
CD4-positive, alpha-beta memory T cell
22
monocyte
13
1
1
1
1
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