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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
total RNA-seq
83
ATAC-seq
35
snATAC-seq
34
single cell RNA-seq
31
ChIP-seq
17
pCHi-C
9
RRBS
6
Hi-C
6
WGBS
2
DNase-seq
1
DNAme array
Assay category
129
Transcription
120
DNA accessibility
31
DNA binding
16
DNA methylation
6
3D chromatin structure
Target of assay
24
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
88
February, 2023
57
May, 2020
46
February, 2021
37
September, 2020
35
May, 2021
13
August, 2017
11
October, 2019
8
January, 2021
8
July, 2019
7
June, 2019
3
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
November, 2018
1
November, 2020
1
September, 2018
Available data
bigWig
605
bam
408
fastq
292
bed narrowPeak
270
tsv
zippedFastqFolder
106
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
csv
1
tar
Organism
319
Homo sapiens
Biosample type
949
tissue
319
primary cell
136
cell line
135
in vitro differentiated cells
7
stem cell
Organ
95
epithelium
74
pancreas
8
blood
8
bodily fluid
8
kidney
8
vasculature
7
blood vessel
7
connective tissue
7
vein
3
heart
3
liver
3
musculature of body
eye
1
bone element
1
bone marrow
1
brain
Project
161
HPAP
133
AMP
24
T1D
1
ITG
Genome assembly (visualization)
31
hg19
17
GRCh38
Lab
161
Klaus Kaestner, Upenn
133
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
16
inconsistent ontology term
files.file_type!
bigWig
zippedFastqFolder
month_released!
November, 2018
organ_slims!
eye
BIOSAMPLE
ASSAY
319 results
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total RNA-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
ChIP-seq
pCHi-C
RRBS
Hi-C
WGBS
DNase-seq
DNAme array
primary cell
Langerhans cell
27
33
pancreatic alpha cell
42
6
1
6
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
2
1
CD4-positive, alpha-beta memory T cell
22
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