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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ATAC-seq
31
ChIP-seq
17
pCHi-C
9
RRBS
8
snATAC-seq
3
Hi-C
3
total RNA-seq
2
DNase-seq
2
single cell RNA-seq
1
DNAme array
Assay category
92
DNA accessibility
31
DNA binding
10
DNA methylation
5
Transcription
3
3D chromatin structure
Target of assay
24
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
57
May, 2020
35
May, 2021
13
August, 2017
12
February, 2023
10
October, 2019
8
January, 2021
8
July, 2019
8
June, 2019
1
February, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
November, 2020
1
September, 2018
Available data
587
bam
bigWig
279
bed narrowPeak
259
tsv
235
fastq
97
bigBed narrowPeak
96
tagAlign
42
bed broadPeak
42
bigBed broadPeak
31
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
3
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
158
Homo sapiens
Biosample type
908
tissue
158
primary cell
122
in vitro differentiated cells
71
cell line
7
stem cell
Organ
33
epithelium
12
pancreas
8
blood
8
bodily fluid
8
kidney
8
vasculature
7
blood vessel
7
connective tissue
7
vein
3
heart
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
Project
133
AMP
24
T1D
1
ITG
Genome assembly (visualization)
27
hg19
16
GRCh38
Lab
Klaus Kaestner, Upenn
133
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
15
inconsistent ontology term
1
audit script error
files.file_type!
bigWig
lab.title!
Klaus Kaestner, Upenn
organ_slims!
liver
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
158 results
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ATAC-seq
ChIP-seq
pCHi-C
RRBS
snATAC-seq
Hi-C
total RNA-seq
DNase-seq
single cell RNA-seq
DNAme array
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
1
CD4-positive, alpha-beta memory T cell
22
monocyte
13
1
1
1
1
macrophage
11
1
peripheral blood mononuclear cell
8
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