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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
29
ChIP-seq
15
pCHi-C
9
RRBS
3
Hi-C
2
DNase-seq
1
DNAme array
Assay category
182
Transcription
179
DNA accessibility
57
DNA methylation
29
DNA binding
3
3D chromatin structure
Target of assay
22
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
134
May, 2022
88
February, 2023
57
May, 2020
56
September, 2020
45
February, 2021
34
May, 2021
13
August, 2017
11
October, 2019
8
January, 2021
8
July, 2019
5
June, 2019
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
September, 2018
Available data
bigWig
564
bam
397
fastq
272
bed narrowPeak
255
tsv
153
zippedFastqFolder
100
tagAlign
88
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
3
hdf5
3
hic
2
csv
1
bedpe bed3+
1
tar
Organism
465
Homo sapiens
Biosample type
914
tissue
465
primary cell
95
in vitro differentiated cells
92
cell line
6
stem cell
Organ
172
epithelium
151
pancreas
8
blood
8
bodily fluid
8
kidney
8
vasculature
7
blood vessel
connective tissue
7
vein
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
Project
311
HPAP
130
AMP
23
T1D
1
ITG
Genome assembly (visualization)
26
hg19
16
GRCh38
Lab
311
Klaus Kaestner, Upenn
130
AMP-T2D consortium
23
Kyle Gaulton, UCSD
1
ITG
Audit category:
28
audit script error
13
inconsistent ontology term
files.file_type!
bigWig
month_released!
November, 2017
October, 2022
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
465 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
31
6
pancreatic beta cell
13
11
16
6
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
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