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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ATAC-seq
79
total RNA-seq
56
snATAC-seq
47
WGBS
47
single cell RNA-seq
32
ChIP-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
DNase-seq
1
DNAme array
Assay category
180
DNA accessibility
126
Transcription
58
DNA methylation
32
DNA binding
6
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
134
May, 2022
88
February, 2023
57
May, 2020
September, 2020
46
February, 2021
35
May, 2021
13
August, 2017
11
October, 2019
9
July, 2019
8
January, 2021
8
June, 2019
3
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
November, 2020
1
September, 2018
Available data
bigWig
599
bam
363
fastq
285
bed narrowPeak
270
tsv
134
zippedFastqFolder
100
tagAlign
99
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
419
Homo sapiens
Biosample type
1004
tissue
419
primary cell
138
cell line
130
in vitro differentiated cells
7
stem cell
Organ
159
epithelium
138
pancreas
8
blood
8
bodily fluid
8
kidney
8
vasculature
7
blood vessel
7
connective tissue
7
vein
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
Project
258
HPAP
136
AMP
24
T1D
1
ITG
Genome assembly (visualization)
32
hg19
17
GRCh38
Lab
258
Klaus Kaestner, Upenn
136
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
16
inconsistent ontology term
files.file_type!
bigWig
month_released!
September, 2020
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
419 results
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ATAC-seq
total RNA-seq
snATAC-seq
WGBS
single cell RNA-seq
ChIP-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
primary cell
Langerhans cell
48
45
pancreatic alpha cell
22
27
31
6
1
pancreatic beta cell
13
10
16
6
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
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