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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
single cell RNA-seq
82
ATAC-seq
56
snATAC-seq
42
total RNA-seq
17
pCHi-C
16
ChIP-seq
9
RRBS
3
Hi-C
2
DNase-seq
1
DNAme array
Assay category
140
DNA accessibility
129
Transcription
16
DNA binding
10
DNA methylation
3
3D chromatin structure
Target of assay
12
control
7
histone
7
histone modification
4
broad histone mark
narrow histone mark
Date released
57
May, 2020
54
May, 2022
51
February, 2023
40
February, 2021
40
September, 2020
33
May, 2021
9
October, 2019
8
January, 2021
8
July, 2019
8
June, 2019
1
August, 2017
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
November, 2020
1
September, 2018
Available data
333
bam
bigWig
157
tsv
142
bed narrowPeak
142
fastq
73
zippedFastqFolder
59
bigBed narrowPeak
51
tagAlign
39
bed broadPeak
39
bigBed broadPeak
31
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
3
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
315
Homo sapiens
Biosample type
733
tissue
315
primary cell
118
in vitro differentiated cells
35
cell line
7
stem cell
Organ
174
epithelium
pancreas
8
blood
8
bodily fluid
8
kidney
7
connective tissue
7
vasculature
6
blood vessel
6
vein
3
heart
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
Project
172
HPAP
118
AMP
24
T1D
1
ITG
Genome assembly (visualization)
27
hg19
16
GRCh38
Lab
172
Klaus Kaestner, Upenn
118
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
28
audit script error
15
inconsistent ontology term
files.file_type!
bigWig
organ_slims!
liver
pancreas
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
315 results
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single cell RNA-seq
ATAC-seq
snATAC-seq
total RNA-seq
pCHi-C
ChIP-seq
RRBS
Hi-C
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
1
CD4-positive, alpha-beta memory T cell
22
monocyte
13
1
1
1
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