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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ChIP-seq
2
pCHi-C
1
ATAC-seq
1
RRBS
Assay category
3
DNA binding
1
DNA accessibility
1
DNA methylation
Target of assay
3
control
Date released
3
June, 2019
1
February, 2021
1
July, 2019
1
May, 2021
1
November, 2020
Available data
38
bam
bigWig
17
bed narrowPeak
17
tsv
15
bigBed narrowPeak
8
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
3
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
7
Homo sapiens
Biosample type
222
tissue
40
in vitro differentiated cells
10
cell line
7
primary cell
1
stem cell
Organ
175
epithelium
154
pancreas
8
blood
8
bodily fluid
8
kidney
8
vasculature
7
blood vessel
7
connective tissue
7
vein
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
Project
6
AMP
1
T1D
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
6
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
files.file_type!
bigWig
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
7 results
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ChIP-seq
pCHi-C
ATAC-seq
RRBS
primary cell
cardiac fibroblast
2
1
osteoblast
1
1
adult endothelial progenitor cell
1
mesenchymal stem cell
1
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