Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 122ATAC-seq
  • 95total RNA-seq
  • 87single cell RNA-seq
  • 56snATAC-seq
  • 47WGBS
  • 32ChIP-seq
  • 17pCHi-C
  • 10RRBS
  • 6Hi-C
  • 2DNase-seq
  • 1DNAme array
Assay category
  • 182Transcription
  • 180DNA accessibility
  • 58DNA methylation
  • 32DNA binding
  • 63D chromatin structure
Target of assay
  • 25control
  • 7histone
  • 7histone modification
  • 4broad histone mark
  • 3narrow histone mark
Date released
  • 134May, 2022
  • 88February, 2023
  • 57May, 2020
  • 56September, 2020
  • 46February, 2021
  • 35May, 2021
  • 13August, 2017
  • 11October, 2019
  • 9July, 2019
  • 8January, 2021
  • 8June, 2019
  • 3October, 2022
  • 1August, 2021
  • 1March, 2020
  • 1March, 2023
  • 1May, 2019
  • 1November, 2018
  • 1November, 2020
  • 1September, 2018
Available data
  • bigWig
  • 609bam
  • 409fastq
  • 295bed narrowPeak
  • 270tsv
  • 153zippedFastqFolder
  • 109bigBed narrowPeak
  • 100tagAlign
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 37bed bed3+
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 6hic
  • 4bedpe bed3+
  • 4hdf5
  • 3cool
  • 2csv
  • 1bed bed3
  • 1tar
Organism
  • 475Homo sapiens
Biosample type
  • 1005tissue
  • 475primary cell
  • 140cell line
  • 135in vitro differentiated cells
  • 7stem cell
Organ
  • 175epithelium
  • 154pancreas
  • 8blood
  • 8bodily fluid
  • 8kidney
  • 8vasculature
  • 7blood vessel
  • 7connective tissue
  • 7vein
  • 3heart
  • 3liver
  • 3musculature of body
  • 2eye
  • 1bone element
  • 1bone marrow
  • 1brain
Project
  • 314HPAP
  • 136AMP
  • 24T1D
  • 1ITG
Genome assembly (visualization)
  • 32hg19
  • 17GRCh38
Lab
  • 314Klaus Kaestner, Upenn
  • 136AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
  • 1ITG
Audit category:
  • 31audit script error
  • 16inconsistent ontology term
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

475 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
primary cell
Langerhans cell8548
pancreatic alpha cell22423161
pancreatic beta cell13111661
exocrine cell39
naive thymus-derived CD4-positive, alpha-beta T cell22121
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego