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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
278
ChIP-seq
231
total RNA-seq
158
ATAC-seq
112
single cell RNA-seq
35
snATAC-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
345
Transcription
278
DNA binding
225
DNA accessibility
17
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
88
February, 2023
72
September, 2018
58
August, 2017
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
September, 2020
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
609
bigWig
608
bam
367
fastq
294
bed narrowPeak
270
tsv
zippedFastqFolder
108
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
csv
1
bed bed3
1
tar
Organism
892
Homo sapiens
Biosample type
2769
tissue
892
primary cell
632
cell line
391
in vitro differentiated cells
10
stem cell
Organ
307
epithelium
247
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
556
AMP
204
T1D
131
HPAP
1
ITG
Genome assembly (visualization)
627
hg19
532
GRCh38
Lab
521
AMP-T2D consortium
239
Kyle Gaulton, UCSD
131
Klaus Kaestner, Upenn
1
ITG
Audit category:
54
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
csv
zippedFastqFolder
month_released!
September, 2020
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
892 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
WGBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
37
11
12
1
6
pancreatic beta cell
13
20
9
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
Langerhans cell
12
27
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