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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
87
total RNA-seq
72
ATAC-seq
70
single cell RNA-seq
47
WGBS
18
DNase-seq
7
Hi-C
6
RRBS
1
FAIRE-seq
Assay category
157
Transcription
92
DNA binding
91
DNA accessibility
53
DNA methylation
7
3D chromatin structure
Target of assay
66
histone
66
histone modification
35
narrow histone mark
31
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
61
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
33
October, 2019
29
August, 2017
20
June, 2019
19
September, 2020
12
July, 2019
7
August, 2020
6
February, 2021
6
November, 2017
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
238
fastq
236
bam
225
bigWig
110
tsv
106
bed narrowPeak
80
zippedFastqFolder
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
400
Homo sapiens
Biosample type
400
primary cell
79
cell line
24
in vitro differentiated cells
14
tissue
Organ
401
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
9
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
artery
1
bone element
1
bone marrow
1
pericardium
Project
248
AMP
152
HPAP
Genome assembly (visualization)
221
hg19
219
GRCh38
Lab
248
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
csv
month_released!
December, 2019
organ_slims!
artery
BIOSAMPLE
ASSAY
400 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
RRBS
FAIRE-seq
primary cell
pancreatic alpha cell
13
52
35
12
31
1
pancreatic beta cell
13
21
23
12
16
1
pancreatic acinar cell
8
4
9
12
1
pancreatic ductal cell
13
4
4
10
endothelial cell of umbilical vein
17
2
2
1
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