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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
40
ATAC-seq
39
ChIP-seq
18
DNase-seq
12
total RNA-seq
6
RRBS
4
single cell RNA-seq
2
Hi-C
1
FAIRE-seq
Assay category
59
DNA accessibility
47
DNA methylation
39
DNA binding
16
Transcription
2
3D chromatin structure
Target of assay
29
histone
29
histone modification
15
broad histone mark
14
narrow histone mark
7
control
3
RNA binding protein
3
transcription factor
Date released
80
May, 2022
32
October, 2019
20
June, 2019
13
July, 2019
5
December, 2019
5
May, 2019
4
April, 2018
4
August, 2021
Available data
242
bam
fastq
231
bigWig
116
tsv
106
bed narrowPeak
80
zippedFastqFolder
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
163
Homo sapiens
Biosample type
163
primary cell
78
cell line
15
tissue
5
in vitro differentiated cells
Organ
163
epithelium
85
pancreas
36
connective tissue
36
kidney
29
vasculature
26
blood vessel
20
vein
14
liver
14
musculature of body
13
heart
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
83
AMP
80
HPAP
Genome assembly (visualization)
65
hg19
60
GRCh38
Lab
83
AMP-T2D consortium
80
Klaus Kaestner, Upenn
Audit category:
9
inconsistent ontology term
files.file_type!
fastq
hic
BIOSAMPLE
ASSAY
163 results
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WGBS
ATAC-seq
ChIP-seq
DNase-seq
total RNA-seq
RRBS
single cell RNA-seq
Hi-C
FAIRE-seq
primary cell
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
endothelial cell of umbilical vein
17
2
1
epithelial cell of proximal tubule
10
1
1
1
hepatocyte
4
1
5
1
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