Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ATAC-seq
154
ChIP-seq
127
total RNA-seq
59
single cell RNA-seq
41
WGBS
29
snATAC-seq
17
pCHi-C
10
Hi-C
9
RRBS
6
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
204
DNA accessibility
188
Transcription
154
DNA binding
51
DNA methylation
10
3D chromatin structure
Target of assay
145
histone
145
histone modification
81
broad histone mark
64
narrow histone mark
11
control
1
RNA binding protein
1
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
June, 2019
34
October, 2019
31
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
6
November, 2020
5
April, 2018
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
Available data
561
bigWig
549
bam
fastq
270
tsv
243
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
57
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
13
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
624
Homo sapiens
Biosample type
2236
tissue
624
primary cell
253
in vitro differentiated cells
235
cell line
6
stem cell
Organ
148
epithelium
88
pancreas
27
vasculature
26
blood vessel
23
kidney
22
vein
19
connective tissue
12
liver
8
blood
8
bodily fluid
7
brain
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
264
AMP
204
T1D
155
HPAP
1
ITG
Genome assembly (visualization)
362
hg19
260
GRCh38
Lab
239
Kyle Gaulton, UCSD
229
AMP-T2D consortium
155
Klaus Kaestner, Upenn
1
ITG
Audit category:
22
inconsistent ontology term
4
audit script error
files.file_type!
fastq
lab.title!
Mark McCarthy, Oxford
month_released!
June, 2019
September, 2017
BIOSAMPLE
ASSAY
624 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
15
85
54
1
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
2
33
4
1
pancreatic beta cell
13
16
1
+ See 75 more…
See all biosamples
Download