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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
ChIP-seq
129
ATAC-seq
127
total RNA-seq
30
DNase-seq
26
single cell RNA-seq
17
pCHi-C
10
Hi-C
9
RRBS
8
snATAC-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
180
DNA binding
168
DNA accessibility
155
Transcription
10
3D chromatin structure
10
DNA methylation
Target of assay
164
histone
164
histone modification
89
broad histone mark
75
narrow histone mark
19
control
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
May, 2022
51
June, 2019
34
October, 2019
31
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
6
November, 2020
5
April, 2018
5
December, 2019
4
August, 2021
4
May, 2019
3
February, 2021
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
Available data
603
bigWig
599
bam
fastq
285
bed narrowPeak
270
tsv
100
tagAlign
99
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
37
bed bed3+
19
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
540
Homo sapiens
Biosample type
2345
tissue
540
primary cell
241
in vitro differentiated cells
233
cell line
6
stem cell
Organ
85
epithelium
35
connective tissue
34
kidney
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
12
brain
12
heart
8
blood
8
bodily fluid
8
pancreas
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
314
AMP
204
T1D
21
HPAP
1
ITG
Genome assembly (visualization)
397
hg19
302
GRCh38
Lab
279
AMP-T2D consortium
239
Kyle Gaulton, UCSD
21
Klaus Kaestner, Upenn
1
ITG
Audit category:
44
inconsistent ontology term
4
audit script error
files.file_type!
fastq
lab.title!
Struan F.A. Grant, CHOP
month_released!
May, 2022
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
540 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
single cell RNA-seq
pCHi-C
Hi-C
RRBS
snATAC-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
54
1
1
CD8-positive, alpha-beta T cell
33
2
4
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
1
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
2
1
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