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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
68
ChIP-seq
29
total RNA-seq
25
DNase-seq
8
RRBS
5
single cell RNA-seq
3
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
155
DNA accessibility
68
DNA binding
36
Transcription
9
DNA methylation
3
3D chromatin structure
Target of assay
50
histone
50
histone modification
25
broad histone mark
25
narrow histone mark
13
control
5
RNA binding protein
5
transcription factor
Date released
102
May, 2020
50
June, 2019
34
October, 2019
24
July, 2019
20
May, 2021
12
February, 2023
6
November, 2020
5
April, 2018
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
1
August, 2017
1
March, 2020
Available data
412
bam
368
bigWig
fastq
170
bed narrowPeak
165
tsv
98
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
27
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
hdf5
1
tar
Organism
272
Homo sapiens
Biosample type
1820
tissue
272
primary cell
199
in vitro differentiated cells
186
cell line
4
stem cell
Organ
85
epithelium
36
kidney
35
connective tissue
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
brain
5
eye
5
pancreas
2
adipose tissue
2
artery
1
pericardium
Project
272
AMP
Genome assembly (visualization)
172
hg19
118
GRCh38
Lab
272
AMP-T2D consortium
239
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
1
ITG
Audit category:
42
inconsistent ontology term
1
audit script error
files.file_type!
fastq
organ_slims!
brain
BIOSAMPLE
ASSAY
272 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
RRBS
single cell RNA-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
2
1
monocyte
15
1
1
1
epithelial cell of proximal tubule
10
1
1
1
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