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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
40
ATAC-seq
39
ChIP-seq
18
DNase-seq
7
Hi-C
7
total RNA-seq
6
RRBS
4
single cell RNA-seq
1
FAIRE-seq
Assay category
59
DNA accessibility
47
DNA methylation
39
DNA binding
11
Transcription
7
3D chromatin structure
Target of assay
29
histone
29
histone modification
15
broad histone mark
14
narrow histone mark
7
control
3
RNA binding protein
3
transcription factor
Date released
80
May, 2022
33
October, 2019
20
June, 2019
13
July, 2019
December, 2019
5
May, 2019
4
April, 2018
4
August, 2021
3
October, 2022
1
March, 2020
Available data
fastq
176
bam
165
bigWig
85
tsv
80
zippedFastqFolder
71
bed narrowPeak
47
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
163
Homo sapiens
Biosample type
163
primary cell
79
cell line
14
tissue
5
in vitro differentiated cells
Organ
163
epithelium
88
pancreas
36
connective tissue
36
kidney
31
vasculature
28
blood vessel
22
vein
14
musculature of body
13
heart
12
brain
9
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
83
HPAP
80
AMP
Genome assembly (visualization)
65
hg19
55
GRCh38
Lab
83
Klaus Kaestner, Upenn
80
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
4
audit script error
files.file_type!
fastq
month_released!
December, 2019
September, 2018
BIOSAMPLE
ASSAY
163 results
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Clear Filters
WGBS
ATAC-seq
ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
single cell RNA-seq
FAIRE-seq
primary cell
pancreatic alpha cell
25
22
1
pancreatic beta cell
16
13
1
endothelial cell of umbilical vein
17
2
2
1
epithelial cell of proximal tubule
10
1
1
1
kidney epithelial cell
5
1
1
1
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