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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
80
total RNA-seq
68
ATAC-seq
59
single cell RNA-seq
41
WGBS
29
snATAC-seq
17
pCHi-C
10
Hi-C
9
RRBS
6
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
154
DNA binding
141
Transcription
104
DNA accessibility
51
DNA methylation
10
3D chromatin structure
Target of assay
145
histone
145
histone modification
81
broad histone mark
64
narrow histone mark
11
control
1
RNA binding protein
1
transcription factor
Date released
206
May, 2021
May, 2020
134
May, 2022
June, 2019
34
October, 2019
31
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
6
November, 2020
5
April, 2018
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
Available data
428
bigWig
416
bam
fastq
248
bed narrowPeak
177
tsv
153
zippedFastqFolder
100
tagAlign
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
13
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
477
Homo sapiens
Biosample type
1926
tissue
477
primary cell
253
in vitro differentiated cells
234
cell line
6
stem cell
Organ
148
epithelium
88
pancreas
27
vasculature
26
blood vessel
23
kidney
22
vein
19
connective tissue
12
liver
8
blood
8
bodily fluid
7
brain
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
162
AMP
159
T1D
155
HPAP
1
ITG
Genome assembly (visualization)
272
hg19
215
GRCh38
Lab
194
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
127
AMP-T2D consortium
1
ITG
Audit category:
14
inconsistent ontology term
4
audit script error
files.file_type!
fastq
month_released!
July, 2018
June, 2019
May, 2020
BIOSAMPLE
ASSAY
477 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
52
13
1
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
33
2
1
pancreatic beta cell
13
16
1
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