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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
39
ATAC-seq
5
single cell RNA-seq
3
Hi-C
Assay category
41
DNA methylation
39
DNA accessibility
5
Transcription
3
3D chromatin structure
Date released
80
May, 2022
5
April, 2018
3
October, 2022
Available data
fastq
194
bam
192
bigWig
108
tsv
80
zippedFastqFolder
68
bed narrowPeak
22
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
88
Homo sapiens
Biosample type
292
tissue
92
cell line
88
primary cell
3
in vitro differentiated cells
Organ
168
epithelium
88
pancreas
36
connective tissue
36
kidney
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
pericardium
Project
83
HPAP
5
AMP
Genome assembly (visualization)
8
hg19
5
GRCh38
Lab
83
Klaus Kaestner, Upenn
5
AMP-T2D consortium
Audit category:
3
audit script error
files.file_type!
fastq
month_released!
November, 2017
organ_slims!
pericardium
BIOSAMPLE
ASSAY
88 results
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WGBS
ATAC-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic alpha cell
25
22
1
pancreatic beta cell
16
13
1
pancreatic acinar cell
4
3
1
pancreatic ductal cell
1
pancreatic stellate cell
1
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