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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ChIP-seq
129
ATAC-seq
125
total RNA-seq
54
single cell RNA-seq
29
snATAC-seq
24
DNase-seq
17
pCHi-C
8
RRBS
3
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
182
DNA accessibility
181
Transcription
168
DNA binding
9
DNA methylation
3
3D chromatin structure
Target of assay
149
histone
149
histone modification
80
broad histone mark
69
narrow histone mark
17
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
54
May, 2022
51
June, 2019
26
July, 2019
18
September, 2020
13
October, 2019
12
February, 2023
8
January, 2021
6
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
1
August, 2017
1
March, 2023
Available data
392
bigWig
383
bam
206
bed narrowPeak
160
tsv
fastq
100
tagAlign
73
zippedFastqFolder
66
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
560
Homo sapiens
Biosample type
1975
tissue
560
primary cell
250
in vitro differentiated cells
77
cell line
6
stem cell
Organ
168
epithelium
pancreas
36
connective tissue
36
kidney
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
283
AMP
204
T1D
72
HPAP
1
ITG
Genome assembly (visualization)
369
hg19
284
GRCh38
Lab
248
AMP-T2D consortium
239
Kyle Gaulton, UCSD
72
Klaus Kaestner, Upenn
1
ITG
Audit category:
46
inconsistent ontology term
files.file_type!
fastq
organ_slims!
pancreas
vasculature
BIOSAMPLE
ASSAY
560 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
15
54
1
1
Langerhans cell
51
21
CD8-positive, alpha-beta T cell
33
2
4
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
1
CD4-positive, alpha-beta memory T cell
22
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