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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
187
ATAC-seq
187
single cell RNA-seq
148
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
pCHi-C
Assay category
381
Transcription
274
DNA accessibility
148
DNA binding
57
DNA methylation
6
3D chromatin structure
Target of assay
119
histone
119
histone modification
63
narrow histone mark
56
broad histone mark
32
control
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
51
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
27
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
450
bam
432
bigWig
404
fastq
218
tsv
158
bed narrowPeak
153
zippedFastqFolder
99
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
hdf5
3
cool
2
csv
1
bed bed3
tar
Organism
867
Homo sapiens
Biosample type
2709
tissue
867
primary cell
573
cell line
256
in vitro differentiated cells
10
stem cell
Organ
398
epithelium
346
pancreas
36
connective tissue
34
kidney
32
vasculature
27
blood vessel
21
vein
15
brain
14
musculature of body
13
liver
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
489
AMP
324
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
429
hg19
378
GRCh38
Lab
489
AMP-T2D consortium
324
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
50
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
hdf5
tar
month_released!
May, 2021
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
867 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
RRBS
Hi-C
small RNA-seq
pCHi-C
primary cell
pancreatic alpha cell
52
35
12
13
31
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
13
16
1
exocrine cell
39
pancreatic acinar cell
4
9
12
8
1
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