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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
246
total RNA-seq
195
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
434
Transcription
283
DNA accessibility
279
DNA binding
58
DNA methylation
6
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
25
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
606
bigWig
602
bam
404
fastq
290
bed narrowPeak
268
tsv
153
zippedFastqFolder
104
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1077
Homo sapiens
Biosample type
2283
tissue
1077
primary cell
661
cell line
393
in vitro differentiated cells
10
stem cell
Organ
399
epithelium
341
pancreas
38
connective tissue
36
kidney
35
vasculature
29
blood vessel
22
vein
18
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
548
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
617
hg19
529
GRCh38
Lab
513
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
hdf5
month_released!
September, 2017
organ_slims!
adipose tissue
organ_slims!!
adipose tissue
BIOSAMPLE
ASSAY
1077 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
33
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
21
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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