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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
total RNA-seq
151
ATAC-seq
102
single cell RNA-seq
42
ChIP-seq
31
DNase-seq
17
pCHi-C
10
RRBS
8
snATAC-seq
4
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
259
Transcription
191
DNA accessibility
42
DNA binding
11
DNA methylation
4
3D chromatin structure
Target of assay
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
88
May, 2021
48
July, 2018
43
April, 2018
41
September, 2018
36
June, 2019
31
July, 2019
21
August, 2017
12
February, 2023
12
October, 2019
8
January, 2021
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
February, 2021
3
June, 2018
2
May, 2019
2
October, 2018
1
August, 2021
1
November, 2018
Available data
406
bam
373
bigWig
264
tsv
167
fastq
79
bed narrowPeak
62
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
hic
2
csv
2
tagAlign
1
bed bed3
1
bedpe bed3+
1
tar
Organism
524
Homo sapiens
Biosample type
2139
tissue
622
cell line
524
primary cell
278
in vitro differentiated cells
8
stem cell
Organ
186
epithelium
136
pancreas
31
connective tissue
26
kidney
18
brain
18
vasculature
13
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
6
musculature of body
5
vein
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
404
AMP
120
T1D
Genome assembly (visualization)
393
hg19
327
GRCh38
Lab
399
AMP-T2D consortium
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
Audit category:
37
inconsistent ontology term
files.file_type!
hic
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
histone
BIOSAMPLE
ASSAY
524 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
DNase-seq
pCHi-C
RRBS
snATAC-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
15
1
1
pancreatic beta cell
10
7
12
6
pancreatic alpha cell
10
6
12
6
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
1
CD4-positive, alpha-beta memory T cell
22
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