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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
total RNA-seq
92
ChIP-seq
72
ATAC-seq
70
single cell RNA-seq
47
WGBS
18
DNase-seq
6
RRBS
2
Hi-C
1
FAIRE-seq
Assay category
164
Transcription
92
DNA binding
91
DNA accessibility
53
DNA methylation
2
3D chromatin structure
Target of assay
66
histone
66
histone modification
35
narrow histone mark
31
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
61
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
32
October, 2019
29
August, 2017
20
June, 2019
19
September, 2020
14
July, 2019
7
August, 2020
6
February, 2021
6
November, 2017
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
2
October, 2018
1
June, 2018
Available data
243
bam
238
fastq
232
bigWig
117
tsv
106
bed narrowPeak
80
zippedFastqFolder
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
402
Homo sapiens
Biosample type
402
primary cell
78
cell line
24
in vitro differentiated cells
16
tissue
Organ
401
epithelium
343
pancreas
39
connective tissue
36
kidney
35
vasculature
29
blood vessel
21
brain
20
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
253
AMP
149
HPAP
Genome assembly (visualization)
226
GRCh38
223
hg19
Lab
253
AMP-T2D consortium
149
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
hic
BIOSAMPLE
ASSAY
402 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
RRBS
Hi-C
FAIRE-seq
primary cell
pancreatic alpha cell
52
13
35
12
31
pancreatic beta cell
21
13
23
12
16
pancreatic acinar cell
4
8
9
12
pancreatic ductal cell
4
13
4
10
endothelial cell of umbilical vein
17
2
1
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