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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
8
DNase-seq
7
total RNA-seq
4
Hi-C
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
23
DNA binding
10
DNA accessibility
7
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
4
control
2
RNA binding protein
2
transcription factor
Date released
22
October, 2019
6
July, 2019
6
June, 2019
6
November, 2017
5
December, 2019
1
March, 2020
Available data
44
bam
39
bigWig
27
bed narrowPeak
23
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
13
bed bed3+
7
tsv
6
fastq
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
46
Homo sapiens
Biosample type
449
cell line
424
tissue
46
primary cell
15
in vitro differentiated cells
Organ
322
epithelium
266
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
10
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
46
AMP
Genome assembly (visualization)
40
hg19
30
GRCh38
Lab
46
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
tagAlign
zippedFastqFolder
BIOSAMPLE
ASSAY
46 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
ATAC-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
hepatocyte
1
5
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
Liver fetal (hepatocyte)
1
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