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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
total RNA-seq
129
ATAC-seq
113
single cell RNA-seq
104
ChIP-seq
56
snATAC-seq
28
DNase-seq
17
pCHi-C
9
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
277
Transcription
214
DNA accessibility
104
DNA binding
10
DNA methylation
7
3D chromatin structure
Target of assay
79
histone
79
histone modification
44
broad histone mark
35
narrow histone mark
19
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
122
May, 2021
54
May, 2022
51
February, 2023
47
June, 2019
42
February, 2021
40
September, 2020
34
October, 2019
26
July, 2019
11
July, 2018
10
April, 2018
9
November, 2017
8
January, 2021
6
August, 2017
6
November, 2020
5
December, 2019
5
May, 2019
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
411
bigWig
403
bam
221
bed narrowPeak
158
tsv
151
fastq
tagAlign
81
bigBed narrowPeak
73
zippedFastqFolder
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
629
Homo sapiens
Biosample type
1737
tissue
629
primary cell
490
cell line
352
in vitro differentiated cells
10
stem cell
Organ
399
epithelium
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
heart
10
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
336
AMP
172
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
334
hg19
236
GRCh38
Lab
301
AMP-T2D consortium
172
Klaus Kaestner, Upenn
155
Kyle Gaulton, UCSD
1
ITG
Audit category:
43
inconsistent ontology term
28
audit script error
Audit category:
1
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
files.file_type!
tagAlign
month_released!
August, 2018
organ_slims!
heart
pancreas
BIOSAMPLE
ASSAY
629 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
monocyte
54
15
1
1
1
CD8-positive, alpha-beta T cell
4
2
33
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
2
1
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