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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
170
ChIP-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
16
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
280
DNA accessibility
170
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
136
histone
136
histone modification
71
broad histone mark
65
narrow histone mark
30
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
121
May, 2021
88
February, 2023
73
September, 2018
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
47
August, 2017
43
April, 2018
34
October, 2019
31
July, 2019
November, 2017
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
604
bigWig
600
bam
400
fastq
289
bed narrowPeak
270
tsv
153
zippedFastqFolder
103
bigBed narrowPeak
tagAlign
43
bed broadPeak
43
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
970
Homo sapiens
Biosample type
2357
tissue
970
primary cell
354
in vitro differentiated cells
339
cell line
10
stem cell
Organ
396
epithelium
346
pancreas
39
connective tissue
36
kidney
31
vasculature
28
blood vessel
22
vein
14
musculature of body
13
heart
12
brain
10
liver
5
eye
2
adipose tissue
2
artery
bone element
1
bone marrow
1
pericardium
Project
534
AMP
324
HPAP
111
T1D
1
ITG
Genome assembly (visualization)
520
hg19
432
GRCh38
Lab
499
AMP-T2D consortium
324
Klaus Kaestner, Upenn
146
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tagAlign
month_released!
January, 2021
November, 2017
organ_slims!
bone element
BIOSAMPLE
ASSAY
970 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
13
31
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
13
16
1
monocyte
54
15
1
1
1
CD8-positive, alpha-beta T cell
4
2
33
1
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