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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
4
DNase-seq
4
Hi-C
2
total RNA-seq
1
FAIRE-seq
Assay category
17
DNA binding
5
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
21
October, 2019
4
July, 2019
November, 2017
2
June, 2019
1
March, 2020
Available data
24
bam
21
bigWig
15
bed narrowPeak
15
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
2
hdf5
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
28
Homo sapiens
Biosample type
133
tissue
60
cell line
28
primary cell
Organ
396
epithelium
346
pancreas
39
connective tissue
36
kidney
31
vasculature
28
blood vessel
22
vein
14
musculature of body
13
heart
12
brain
10
liver
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
28
AMP
Genome assembly (visualization)
22
hg19
16
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
tagAlign
month_released!
January, 2021
November, 2017
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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