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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
142
ChIP-seq
139
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
7
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
388
Transcription
264
DNA accessibility
142
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
120
histone
120
histone modification
63
broad histone mark
57
narrow histone mark
25
control
6
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
122
May, 2021
88
February, 2023
73
September, 2018
59
September, 2020
June, 2019
48
February, 2021
July, 2018
45
August, 2017
43
April, 2018
34
October, 2019
31
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
512
bigWig
500
bam
356
fastq
242
bed narrowPeak
222
tsv
153
zippedFastqFolder
tagAlign
56
bigBed narrowPeak
20
bed broadPeak
20
bigBed broadPeak
13
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
879
Homo sapiens
Biosample type
2162
tissue
879
primary cell
309
in vitro differentiated cells
286
cell line
10
stem cell
Organ
346
epithelium
309
pancreas
31
vasculature
28
blood vessel
22
kidney
22
vein
20
connective tissue
13
brain
8
blood
8
bodily fluid
8
liver
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
434
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
435
hg19
338
GRCh38
Lab
399
AMP-T2D consortium
324
Klaus Kaestner, Upenn
155
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
22
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tagAlign
month_released!
July, 2018
June, 2019
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
879 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
13
5
31
1
Langerhans cell
85
48
pancreatic beta cell
21
23
13
3
16
1
monocyte
54
15
1
1
1
CD8-positive, alpha-beta T cell
4
2
33
1
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