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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ATAC-seq
187
single cell RNA-seq
186
total RNA-seq
127
ChIP-seq
56
snATAC-seq
47
WGBS
19
DNase-seq
10
Hi-C
7
RRBS
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
375
Transcription
263
DNA accessibility
127
DNA binding
54
DNA methylation
10
3D chromatin structure
Target of assay
95
histone
95
histone modification
51
narrow histone mark
44
broad histone mark
27
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
May, 2021
88
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
47
August, 2017
43
April, 2018
42
June, 2019
24
July, 2019
23
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
429
bam
414
bigWig
409
fastq
212
tsv
153
zippedFastqFolder
146
bed narrowPeak
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
25
bed bed3+
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
830
Homo sapiens
Biosample type
2195
tissue
830
primary cell
602
cell line
228
in vitro differentiated cells
10
stem cell
Organ
402
epithelium
346
pancreas
38
connective tissue
37
vasculature
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
10
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
452
AMP
324
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
404
hg19
345
GRCh38
Lab
452
AMP-T2D consortium
324
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
45
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tagAlign
month_released!
May, 2021
organ_slims!
gonad
kidney
BIOSAMPLE
ASSAY
830 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
12
52
13
31
1
Langerhans cell
85
48
pancreatic beta cell
23
12
21
13
16
1
exocrine cell
39
pancreatic acinar cell
9
12
4
8
1
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