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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
111
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
288
DNA accessibility
111
DNA binding
58
DNA methylation
7
3D chromatin structure
Target of assay
139
histone
139
histone modification
71
broad histone mark
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
110
May, 2021
88
February, 2023
59
September, 2020
58
September, 2018
48
February, 2021
48
July, 2018
44
June, 2019
43
April, 2018
31
July, 2019
30
August, 2017
25
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
506
bam
501
bigWig
369
fastq
270
tsv
191
bed narrowPeak
153
zippedFastqFolder
83
bigBed narrowPeak
tagAlign
41
bed broadPeak
41
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
917
Homo sapiens
Biosample type
2325
tissue
917
primary cell
627
cell line
311
in vitro differentiated cells
9
stem cell
Organ
366
epithelium
312
pancreas
35
connective tissue
31
kidney
29
vasculature
24
blood vessel
18
brain
16
vein
11
heart
10
liver
10
musculature of body
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
475
AMP
321
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
461
hg19
383
GRCh38
Lab
450
AMP-T2D consortium
321
Klaus Kaestner, Upenn
145
Kyle Gaulton, UCSD
1
ITG
Audit category:
45
inconsistent ontology term
28
audit script error
Audit category:
21
missing controlled_by
files.file_type!
tagAlign
month_released!
October, 2022
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
917 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
9
31
Langerhans cell
85
48
pancreatic beta cell
21
23
12
9
16
monocyte
54
15
1
1
exocrine cell
39
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